LiquidLib: a C++ library for computing statistical quantities of liquids and liquid-like matter from atomic trajectories with applications to neutron scattering experiments.
Kraken: a soft robot simulation and control platform based on MOOSE
Ascent Dynamics (AD): for efficient rare event and transition pathway sampling and global optimization
All-atom metadynamics: a variation of metadynamics method for direct potential energy landscape sampling.
REMA Toolkit: a matlab toolbox for analyzing relaxation-excitation modes and the statistics of energy landscape in liquids and complex materials.
ST2 Water Model: implementation of ST2 water potential in GROMACS.